@article {167, title = {Site-specific substitution in atomically precise carboranethiol-protected nanoclusters and concomitant changes in electronic properties}, journal = {Nature Communications}, volume = {16}, year = {2025}, month = {01/2025}, type = {Full article}, chapter = {1197}, abstract = {

We report the synthesis of [Ag17(o1-CBT)12]3- abbreviated as Ag17, a stable 8e$^{-}$ anionic cluster with a unique Ag@Ag12@Ag4 core-shell structure, where o1-CBT is ortho-carborane-1-thiol. By substituting Ag atoms with Au and/or Cu at specific sites we created isostructural clusters [AuAg16(o1-CBT)12]3- (AuAg16), [Ag13Cu4(o1-CBT)12]3- (Ag13Cu4) and [AuAg12Cu4(o1-CBT)12]3- (AuAg12Cu4). These substitutions make systematic modulation of their structural and electronic properties. We show that Au preferentially occupies the core, while Cu localizes in the tetrahedral shell, influencing stability and structural diversity of the clusters. The band gap expands systematically (2.09\ eV for Ag17 to 2.28\ eV for AuAg12Cu4), altering optical absorption and emission. Ultrafast optical measurements reveal longer excited-state lifetimes for Cu-containing clusters, highlighting the effect of heteroatom incorporation. These results demonstrate a tunable platform for designing nanoclusters with tailored electronic properties, with implications for optoelectronics and catalysis.

}, keywords = {Alloy, boron, carborane, Cluster, Copper, gold, luminescence, Metal, silver, Structure, thiol}, doi = {https://doi.org/10.1038/s41467-025-56385-w}, url = {https://www.nature.com/articles/s41467-025-56385-w}, author = {Vivek Yadav and Arijit Jana and Swetashree Acharya and Sami Malola and Harshita Nagar and Ankit Sharma and Amoghavarsha Ramachandra Kini and Sudhadevi Antharjanam and Jan Machacek and Kumaran Nair Valsala Devi Adarsh and Tomas Base and Hannu H{\"a}kkinen and Thalappil Pradeep} } @article {164, title = {Competing Intermolecular and Molecule{\textendash}Surface Interactions: Dipole{\textendash}Dipole-Driven Patterns in Mixed Carborane Self-Assembled Monolayers}, journal = {Chemistry of Materials}, volume = {36}, year = {2024}, month = {February 8, 2024}, pages = {2085-2095}, type = {Article}, chapter = {2085}, abstract = {

Carboranedithiol isomers adsorbing with opposite orientations of their dipoles on surfaces are self-assembled together to form mixed monolayers where both lateral dipole{\textendash}dipole and lateral thiol{\textendash}thiolate (S{\textendash}H{\textperiodcentered}{\textperiodcentered}{\textperiodcentered}S) interactions provide enhanced stability over single-component monolayers. We demonstrate the first instance of the ability to map individual isomers in a mixed monolayer using the model system carboranedithiols on Au{111}. The addition of methyl groups to one isomer provides both an enhanced dipole moment and extra apparent height for differentiation via scanning tunneling microscopy (STM). Associated computational investigations rationalize favorable interactions of mixed pairs and the associated stability changes that arise from these interactions. Both STM images and Monte Carlo simulations yield similarly structured mixed monolayers, where approximately 10\% of the molecules have reversed dipole moment orientations but no direct chemical attachment to the surface, leading to homogeneous monolayers with no apparent phase separation. Deprotonating the thiols by depositing the molecules under basic conditions eliminates the lateral S{\textendash}H{\textperiodcentered}{\textperiodcentered}{\textperiodcentered}S interactions while accentuating the dipole{\textendash}dipole forces. The molecular system investigated is composed of isomeric molecules with opposite orientations of dipoles and identical surface packing, which enables the mapping of individual molecules within the mixed monolayers and enables analyses of the contributions of the relatively weak lateral interactions to the overall stability of the assemblies.

}, keywords = {2D assembly, boron, carborane, Cluster Molecules, Dipole-dipole, Molecular interactions, Molecular structure, scanning tunneling microscopy, Supramolecular chemistry}, doi = {https://doi.org/10.1021/acs.chemmater.3c03210}, url = {https://pubs.acs.org/doi/10.1021/acs.chemmater.3c03210}, author = {Katherine E. White and Erin M. Avery and Edison Cummings and Zixiang Hong and Jens Langecker and Aliaksei Vetushka and Michal Dusek and Jan Machacek and Jakub Vi{\v s}n{\'a}k and Jan Endres and Zdenek Bastl and Ersen Mete and Anastassia N. Alexandrova and Tomas Base and Paul S. Weiss} } @article {155, title = {Influence of Terminal Carboxyl Group on Structure and Reactivity of Functionalized m-Carboranethiolate Self-Assembled Monolayers}, journal = {Chemistry of Materials}, volume = {32}, year = {2020}, month = {07/2020}, pages = {6800-6809}, type = {Article}, chapter = {6800}, abstract = {

The structure and function of self-assembled monolayers (SAMs) at the nanoscale are determined by the steric and electronic effects of their building blocks. Carboranethiol molecules form pristine monolayers that provide tunable two-dimensional systems to probe lateral and interfacial interactions. Additional ω-functionality, such as carboxyl groups, can be introduced to change the properties of the exposed surfaces. Here, two geometrically similar isomeric m-carborane analogs of m-mercaptobenzoic acid, 1 COOH-7-SH-1,7-C2B10H10 and racem-1-COOH-9-SH-1,7-C2B10H10, are characterized and their SAMs on Au{111} are examined. The latter isomer belongs to the rare group of chiral cage molecules and becomes, to our knowledge, the first example assembled on Au{111}. Although different in symmetry, molecules of both isomers assemble into similar hexagonal surface patterns. The nearest neighbor spacing of 8.4 {\textpm} 0.4 {\r A} is larger than that of non-carboxylated isomers, consistent with the increased steric demands of the carboxyl groups. Computational modeling reproduced this spacing and suggests a tilt relative to the surface normal. However, tilt domains are not observed experimentally, suggesting the presence of strong lateral interactions. Analyses of the influence of the functional groups through the pseudo-aromatic m carborane skeleton showed that the thiol group attached to either carbon or boron atoms increases the carboxyl group acidity in solution. In contrast, the acidity of the exposed carboxyl group in the SAMs decreases upon surface attachment; computational analyses suggest that the driving force of this shift is the dielectric of the environment in the monolayer as a result of confined intermolecular interactions, proximity to the Au surface, and partial desolvation.

}, keywords = {acidity, carborane, carboxyl, monolayer, SAM, self-assembly}, doi = {https://doi.org/10.1021/acs.chemmater.0c02722}, url = {https://pubs.acs.org/doi/10.1021/acs.chemmater.0c02722}, author = {Dominic P Goronzy and Jan Stanek and Erin Avery and Han Guo and Zdenek Bastl and Michal Dusek and Nathan M Gallup and Saliha Gun and Monika Kucerakova and Brian J Levandowski and Jan Machacek and Vaclav Sicha and John C Thomas and Adem Yavuz and K N Houk and M Fatih Danisman and Ersen Mete and Anastassia N Alexandrova and Tomas Base and Paul S Weiss} } @article {153, title = {Icosahedral Carbaboranes with Peripheral Hydrogen{\textendash} Chalcogenide Groups: Structures from Gas Electron Diffraction and Chemical Shielding in Solution}, journal = {Chemistry A European Journal}, volume = {25}, year = {2019}, month = {February 11, 201}, pages = {2313-2321}, type = {Full paper}, chapter = {2313}, abstract = {

Hydrochalcogeno carbaboranes: Icosahedral carbaboranes with thiol and selenol groups were prepared and their structures determined by gas electron diffraction augmented by ab initio calculated data (see figure). A method for quantifying the experimental contribution to the structural parameters was developed and tested. Comparison of NMR chemical shifts in solution with quantum-chemically calculated values allowed further structural information to be retrieved.

}, keywords = {carborane-diselenol, carborane-dithiol, gass phase electron diffraction, GPE, sturcture}, doi = {DOI : 10.1002/chem.201805145}, url = {https://onlinelibrary.wiley.com/doi/10.1002/chem.201805145}, author = {Tomas Base and Josef Holub and Jindrich Fanfrlik and Drahomir Hnyk and Paul L Lane and Derek A Wann and Yury V Vishnevskiy and Denis Tikhonov and Christian G Reuter and Norbert W Mitzel} } @article {140, title = {Thermal isomerizations of monothiolated carboranes (HS)C2B10H11 and the solid-state investigation of 9-(HS)-1,2-C2B10H11 and 9-(HS)-1,7-C2B10H11}, journal = {Journal of Organometallic Chemistry}, volume = {798}, year = {2015}, month = {12/2015}, pages = {132-140}, type = {Full article}, chapter = {132}, abstract = {

At 300-500 C, three C-thiolated closo-dicarbadodecaborane isomers 1-(HS)-1,2-C2B10H11 (1-o), 1-(HS)-1,7-C2B10H11 (1-m), and 1-(HS)-1,12-C2B10H11 (1-p), and two B-thiolated isomers 9-(HS)-1,7-C2B10H11 (9-m) and 9-(HS)-1,2-C2B10H11 (9-o) show two types of reaction: first, removal of an SH group from the closo-dicarbadodecaborane skeleton, and second, skeletal isomerizations from ortho to meta to para that lead to new isomers. A previously unreported SH skip from carbon-to-boron is also observed. The effect of the thiol group on the skeletal rearrangement is discussed. The isomerisation products are assigned on the basis of correlation of their computationally obtained dipole moments with their gas-chromatographic retention times. Computational results on molecular energies for the mono-thiolated species show good agreement between the calculated relative stabilities and the incidence and relative quantities of the isomerization products. Two of the starting B-thiolated isomers, 9-o and 9-m, were characterized using single-crystal X-ray diffraction analyses and their crystallographic packings as well as some selected structural parameters are discussed. All starting compounds were characterized using multinuclear NMR spectroscopy.

}, keywords = {carborane, Carboranethiol, closo-dicarbadodecaborane thiol, closo-dicarbadodecaboranes, Cluster, Dipole, Isomer, Isomerisation, Thermal Stability}, doi = {10.1016/j.jorganchem.2015.06.020}, url = {http://www.sciencedirect.com/science/article/pii/S0022328X15300462}, author = {Tomas Base and Jan Machacek and Zuzana Hajkova and Jens Langecker and John D Kennedy and Michael J Carr} } @article {138, title = {The gaseous structure of closo-9,12-(SH)2-1,2-C2B10H10, a modifier of gold surfaces, as determined using electron diffraction and computational methods}, journal = {Dalton Transactions}, volume = {42}, year = {2013}, chapter = {12015}, abstract = {

The molecular structure of closo-9,12-(SH)2-1,2-C2B10H10 has been determined by the concerted use of quantum chemical calculations and gas electron diffraction (GED). For the purposes of GED, the architecture of the carbaborane cage was simplified to allow it to have C2v symmetry, while the positioning of the thiol groups means that the molecule had overall C1 symmetry. The accuracy of the experimental structure, as well as that calculated at the MP2(full)/6-311++G(3df,3pd) level, has been gauged by comparison of experimental 11B NMR chemical shifts with those calculated using gauge-invariant atomic orbitals (GIAO) methods. The inclusion of electron correlation in the magnetic property calculations (GIAO-MP2) gave superior results to those carried out using GIAO-HF. The electronic structure of this derivative, with respect to its directional interaction with a metal surface, is outlined.

}, doi = {10.1039/c3dt51393a}, url = {http://pubs.rsc.org/en/results?artrefjournalname=dalton\%20trans.\&artrefstartpage=12015\&artrefvolumeyear=2013\&fcategory=journal}, author = {Derek A Wann and Paul D Lane and Heather E Robertson and Tomas Base and Drahomir Hnyk} } @article {122, title = {Carboranedithiols: Building Blocks for Self-Assembled Monolayers on Copper Surfaces}, journal = {Langmuir}, volume = {28}, year = {2012}, chapter = {12518}, abstract = {

Two different positional isomers of 1,2-dicarbacloso-dodecaboranedithiols, 1,2-(HS)2-1,2-C2B10H10 (1) and 9,12-(HS)2-1,2-C2B10H10 (2), have been investigated as cluster building blocks for self-assembled monolayers (SAMs) on copper surfaces. These two isomers represent a convenient system in which the attachment of SH groups at different positions on the skeleton affects their acidic character and thus also determines their reactivity with a copper surface. Isomer 1 exhibited etching of polycrystalline Cu films, and a detailed investigation of the experimental conditions showed that both the acidic character of SH groups and the presence of oxygen at the copper surface play crucial roles in how the surface reaction proceeds: whether toward a self-assembled monolayer or toward copper film etching. We found that each positional isomer requires completely different conditions for the preparation of a SAM on copper surfaces. Optimized conditions for the former isomer required the exposure of a freshly prepared Cu surface to vapor of 1 in vacuum, which avoided the presence of oxygen and moisture. Adsorption from a dichloromethane solution afforded a sparsely covered Cu(0) surface; isomer 1 effectively removes the surface copper(I) oxide, forming a soluble product, but apparently binds only weakly to the clean Cu(0) surface. In contrast, adsorption of the latter, less volatile isomer proceeded better from a dichloromethane solution than from the vapor phase. Isomer 2 was even able to densely cover the copper surface cleaned up by the dichloromethane solution of 1. Both isomers exhibited high capacity to remove oxygen atoms from the surface copper(I) oxide that forms immediately after the exposure of freshly prepared copper films to ambient atmosphere. Isomer 2 showed suppression of Cu film oxidation. A number of methods including X-ray photoelectron spectroscopy (XPS), X-ray Rutherford back scattering (RBS), proton-induced X-ray emission (PIXE) analysis, atomic force microscopy (AFM), cyclic voltammetry, and contact angle measurements were used to investigate the experimental conditions for the preparation of SAMs of both positional isomers on copper surfaces and to shed light on the interaction between these molecules and a polycrystalline copper surface.

}, doi = {10.1021/la302334x}, url = {http://pubs.acs.org/doi/abs/10.1021\%2Fla302334x}, author = {Tomas Base and Zdenek Bastl and Vladimir Havranek and Jan Machacek and Jens Langecker and Vaclav Malina} } @proceedings {136, title = {Carboranethiols: Building Blocks for Self-Assembled Monolayers on Copper Surfaces, or a Novel Class of Etchants?}, journal = {European Materials Research Society, Spring Meeting}, year = {2012}, publisher = {E-MRS}, address = {Strasbourg, France, 2012 May 14-18}, abstract = {

This contribution aims at showing an unprecedented behavior of carboranedithiols on copper surfaces. Two different positional isomers of 1,2-dicarba-closo-dodecaborane-dithiol, 1,2-(HS)2-1,2-C2B10H10 (1) and 9,12-(HS)2-1,2-C2B10H10 (2), have been used as a convenient molecular system in which the attachment of -SH groups at different positions on the skeleton affects their acidic character and thus determines their reactivity with a copper surface. While the latter isomer represents a weak acid and forms a self-assembled monolayer (SAM) similarly to various aliphatic and aromatic thiols reported previously, the former isomer shows etching of copper leading to a complete dissolution of the films used in our experiments at a rate of approx. 70 nm per hour (in 7.5 mM EtOH solution of 1 at 20 C). A detailed investigation of the experimental conditions showed that the acidic character of -SH groups and the presence of oxygen at the copper surface play crucial role in how the surface reaction proceeds: whether towards the formation of a 1-SAM or towards etching and dissolution of a copper film. Reaction between 1 and a freshly prepared copper surface in vacuum or in a dry and oxygen-free solvent such as toluene, or dichloromethane yields a 1-SAM. This study shows the first thiol derivative that possesses the ability to etch copper films. A number of methods including XPS, RBS, PIXE have been used and the results will be presented and discussed. Acknowledgement: P205/10/0348, GACR

}, author = {Tomas Base and Zdenek Bastl and Vladimir Havranek and Jan Machacek and Vaclav Malina} } @article {117, title = {Carborane-thiol-silver interactions. A comparative study of the molecular protection of silver surfaces}, journal = {Surface and Coatings Technology}, volume = {204}, year = {2010}, chapter = {2639}, abstract = {

The interaction between flat silver surfaces and carboranethiol derivatives, and its relevance regarding the molecular protection of silver against corrosion by hydrogen sulphide, are reported here. A comparison of the protective qualities of four carboranethiols (1-HS-1,2-C2B10H11, 1,2-(HS)2-1,2-C2B10H10, 9,12-(HS)2-1,2-C2B10H10, and 1,12-(HS)2-1,2-C2B10H10) with several organic thiols (1-butanethiol, 1-octanethiol, 1-dodecanethiol, benzene-1,2-dithiol, benzenethiol, and sodium 2-mercaptoethanesulphonate) is provided. All these derivatives are categorized according to their capacity to inhibit the interaction of silver with H2S in the presence of water molecules in the gas phase. We found that significantly better molecular protection for silver surfaces is afforded by the carboranethiol derivatives, and, of these, 9,12-(HS)2-1,2-C2B10H10 proved to be particularly effective. The corrosion of silver by H2S is accompanied by well-defined colour changes from lustrous silver, through yellow, violet, blue, and finally to grey. This sequence has not been reported before and it is used in this study as a qualitative indicator of the extent of silver corrosion. Our results are supported by reflectance UV

}, doi = {10.1016/j.surfcoat.2010.02.019}, url = {http://www.sciencedirect.com/science/article/pii/S0257897210001106}, author = {Tomas Base and Zdenek Bastl and Vladimir Havranek and Kamil Lang and Jonathan Bould and Michael G S Londesborough and Jan Machacek and Jaromir Plesek} } @article {124, title = {An Experimental Solution to the "Missing Hydrogens" Question Surrounding the Macropolyhedral 19-Vertex Boron Hydride Monoanion [B19H22](-), a Simplification of Its Synthesis, and Its Use As an Intermediate in the First Example of syn-B18H22 to anti-B18H22}, journal = {Inorganic Chemistry}, volume = {49}, year = {2010}, month = {03/2010}, pages = {4092{\textendash}4098}, type = {Full article}, chapter = {4092}, abstract = {

The macropolyhedral [B19H22]- monoanion 1 and the dianion [B19H21]2-2 are synthesized in consistent 86-92\% yields by the reaction of [PSH]+[syn-B18H21]- with BH3(SMe2) in 1,2-Cl2C2H4 at 72 {\textdegree}C. [{\textquoteleft}PS{\textquoteright} is an abbreviation for {\textquoteleft}Proton Sponge{\textquoteright}, 1,8-bis-(dimethylamino)naphthalene. {\textquoteleft}PSH{\textquoteright} is its protonated derivative.] The molecular structures of 1 and 2 were elucidated as their [PS{BH2}]+ and [PS{BH2}]2+ salts 1a and 2a by single-crystal X-ray diffraction studies, in which all atoms were located, and supported by mass spectrometric analyses together with calculations of the cluster molecular geometries (ab ignitio and/or DFT) and of 11B chemical shifts based on GIAO-DFT shielding tensors. Acidification of dianion 2 with CF3COOH in acetonitrile, H2SO4 in dichloromethane, or aqueous HCl results in the clean formation of the monoanion [B19H22]-1. Conversely, shaking a concentrated acetonitrile solution of 1 in 0.5 M aqueous NaOH cleanly yields the [B19H21]2- dianion 2. Reaction of a dichloromethane solution of 1 with a 36\% aqueous solution of HCHO in the presence of H2SO4 quantitatively converts 1 at room temperature to a 1:1 mixture of the syn- and anti-isomers of B18H22. This cluster dismantling process is the first example of a syn- to anti-B18H22 isomer conversion.

}, keywords = {anti-B18H22, conversion, macropolyhedral borane clusters, syn-B18H22}, doi = {https://doi.org/10.1021/ic901976y}, url = {http://pubs.acs.org/doi/abs/10.1021/ic901976y}, author = {Michael G S Londesborough and Jonathan Bould and Tomas Base and Drahomir Hnyk and Mario Bakardjiev and Josef Holub and Ivana Cisarova and John D Kennedy} }